STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnzPutative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (304 aa)    
Predicted Functional Partners:
KXB79978.1
Hypothetical protein.
       0.849
KXB79979.1
MazG family protein; KEGG: pit:PIN17_A1669 1.2e-116 MazG family protein; K02428 dITP/XTP pyrophosphatase; Psort location: Cytoplasmic, score: 8.96.
       0.799
KXB78061.1
KEGG: fin:KQS_02220 3.7e-35 nucA; DNA/RNA non-specific endonuclease precursor K01173; Psort location: Extracellular, score: 9.71.
   
   0.694
KXB75157.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
   0.694
KXB74396.1
KEGG: fps:FP2422 5.5e-18 nucA; DNA/RNA non-specific endonuclease K01173.
   
   0.694
valS
valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
 
  
 0.618
argS
arginine--tRNA ligase; KEGG: pmz:HMPREF0659_A6251 1.7e-282 argS; arginine--tRNA ligase K01887; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.554
KXB79976.1
Hypothetical protein; KEGG: bya:BANAU_1965 8.3e-86 yngK; 1,4-alpha-glucan-branching protein; Psort location: Cytoplasmic, score: 8.96.
       0.515
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
 
 0.499
KXB79964.1
KEGG: pmz:HMPREF0659_A6426 7.5e-69 thiamine diphosphokinase K00949.
    
  0.438
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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