STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79922.1KEGG: rcp:RCAP_rcc01550 2.1e-21 M23 family peptidase; Psort location: OuterMembrane, score: 9.93. (339 aa)    
Predicted Functional Partners:
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
    
 0.742
KXB77048.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
  
 0.740
KXB74997.1
Peptidase, M23 family; KEGG: eci:UTI89_C0735 1.3e-23 tolA; cell envelope integrity inner membrane protein TolA K03646.
 
   
 0.727
KXB80088.1
OmpA family protein; KEGG: hhy:Halhy_4875 0.00037 OmpA/MotB domain-containing protein; K02275 cytochrome c oxidase subunit II; Psort location: OuterMembrane, score: 10.00.
 
 0.723
KXB81944.1
Transglycosylase; KEGG: pdn:HMPREF9137_0007 0. transglycosylase; K05366 penicillin-binding protein 1A; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.707
KXB79143.1
KEGG: pdn:HMPREF9137_2497 1.4e-140 N-acetylmuramoyl-L-alanine amidase K01448.
 
  
 0.694
KXB78743.1
OmpA family protein; Psort location: OuterMembrane, score: 9.93.
  
 0.687
KXB76242.1
OmpA family protein; KEGG: pfe:PSF113_0716 0.0018 yfiB; protein YfiB.
  
 0.687
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
 
    0.675
KXB76001.1
Transglycosylase; KEGG: pdn:HMPREF9137_2310 0. transglycosylase; K05366 penicillin-binding protein 1A; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.673
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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