STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (338 aa)    
Predicted Functional Partners:
KXB78128.1
Putative aspartate kinase III; KEGG: pdn:HMPREF9137_1034 2.4e-191 amino acid kinase family; K00928 aspartate kinase; Psort location: Cytoplasmic, score: 8.96; Belongs to the aspartokinase family.
 
 
 0.963
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.963
pgk
Phosphoglycerate kinase; KEGG: pmz:HMPREF0659_A6964 3.2e-196 pgk; phosphoglycerate kinase K00927; Psort location: Cytoplasmic, score: 9.97.
  
 0.833
KXB80432.1
Dihydrodipicolinate reductase; KEGG: pdn:HMPREF9137_0605 5.5e-112 dapB; dihydrodipicolinate reductase K00215; Psort location: Cytoplasmic, score: 9.97; Belongs to the DapB family.
 
  
 0.766
KXB77787.1
KEGG: pmz:HMPREF0659_A5894 1.4e-124 pyridoxal-dependent decarboxylase, pyridoxal binding domain protein; K01586 diaminopimelate decarboxylase; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.730
KXB79563.1
Transporter, CPA2 family; KEGG: cnc:CNE_1c04080 4.7e-13 kdsD; arabinose 5-phosphate isomerase KdsD K03455; Psort location: CytoplasmicMembrane, score: 10.00.
       0.706
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
       0.706
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.681
KXB78009.1
KEGG: pit:PIN17_A1294 9.4e-165 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134; Psort location: Cytoplasmic, score: 9.97.
  
 0.631
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
   
 
  0.574
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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