STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (228 aa)    
Predicted Functional Partners:
KXB79903.1
Efflux ABC transporter, permease protein; KEGG: pfe:PSF113_3968 1.2e-29 lolC; protein LolC K09808; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.970
KXB77797.1
Efflux ABC transporter, permease protein; KEGG: pfe:PSF113_3968 7.7e-24 lolC; protein LolC K09808; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.970
KXB79563.1
Transporter, CPA2 family; KEGG: cnc:CNE_1c04080 4.7e-13 kdsD; arabinose 5-phosphate isomerase KdsD K03455; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.850
KXB78784.1
Efflux transporter, RND family, MFP subunit; KEGG: apb:SAR116_2008 6.1e-05 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.787
KXB74228.1
Efflux transporter, RND family, MFP subunit; KEGG: agr:AGROH133_15208 5.6e-15 transmembrane efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.787
KXB78783.1
Heavy metal efflux pump, CzcA family; KEGG: dat:HRM2_00450 1.4e-145 rndA; protein RndA K07787; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
 
 0.751
KXB79565.1
YitL family protein; KEGG: mai:MICA_2002 3.5e-55 3-deoxy-7-phosphoheptulonate synthase K00243; Psort location: Cytoplasmic, score: 8.96; Belongs to the CvfB family.
       0.739
KXB80597.1
Hypothetical protein.
   
 
 0.726
KXB79891.1
Hypothetical protein.
   
 
 0.726
KXB78090.1
Outer membrane lipoprotein carrier protein LolA; KEGG: cnc:CNE_2c16570 0.00025 acyltransferase.
   
 
 0.726
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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