Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB79566.1ThiF family protein; KEGG: bpb:bpr_I2644 8.2e-63 thiF; thiamine biosynthesis protein ThiF; Psort location: Cytoplasmic, score: 9.97. (295 aa)    
Predicted Functional Partners:
KXB79565.1
YitL family protein; KEGG: mai:MICA_2002 3.5e-55 3-deoxy-7-phosphoheptulonate synthase K00243; Psort location: Cytoplasmic, score: 8.96; Belongs to the CvfB family.
       0.663
KXB76119.1
ThiF family protein; KEGG: dai:Desaci_2489 2.7e-16 thiamine biosynthesis protein ThiF, family 2; K03148 sulfur carrier protein ThiS adenylyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
 
0.600
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
     
 0.589
KXB79563.1
Transporter, CPA2 family; KEGG: cnc:CNE_1c04080 4.7e-13 kdsD; arabinose 5-phosphate isomerase KdsD K03455; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.569
KXB79567.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: llm:llmg_0154 7.5e-37 cbr; carbonyl reductase; Psort location: Cytoplasmic, score: 9.97; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.494
KXB81586.1
Hypothetical protein; KEGG: cby:CLM_0574 0.00014 bacteriocin biosynthesis cyclodehydratase; Psort location: Cytoplasmic, score: 8.96.
   
 0.458
KXB79704.1
Plasmid recombination enzyme; KEGG: edi:EDI_175070 0.0013 myosin-2 heavy chain, non muscle K10352; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.449
KXB78750.1
Cysteine synthase A; KEGG: pmz:HMPREF0659_A6111 6.0e-131 cysK; cysteine synthase A K01738; Psort location: Cytoplasmic, score: 9.26; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 
 0.449
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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