STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79498.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (219 aa)    
Predicted Functional Partners:
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
  
   0.862
leuS
leucine--tRNA ligase; KEGG: pmz:HMPREF0659_A5028 0. leuS; leucine--tRNA ligase K01869; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.776
KXB77772.1
KEGG: pdn:HMPREF9137_0543 0. 2-oxoacid:acceptor oxidoreductase subunit alpha; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Psort location: Cytoplasmic, score: 8.96.
   
   0.695
KXB79497.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.671
KXB79496.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
     0.649
KXB75140.1
KEGG: shn:Shewana3_3590 4.0e-15 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.632
KXB74332.1
KEGG: shn:Shewana3_3590 8.0e-17 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.632
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.602
KXB78950.1
Hypothetical protein; KEGG: acs:100561462 1.6e-07 galactoside 2-alpha-L-fucosyltransferase 2-like; K00718 galactoside 2-L-fucosyltransferase 1/2.
  
     0.567
KXB78732.1
Hypothetical protein.
  
 
 0.515
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.