STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79120.1Nodulation efficiency protein D; Psort location: CytoplasmicMembrane, score: 10.00. (150 aa)    
Predicted Functional Partners:
KXB79121.1
SPFH/Band 7/PHB domain protein; KEGG: reh:H16_A2036 1.1e-53 h16_A2036; membrane protease subunits, stomatin/prohibitin homologs; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.972
KXB79122.1
KEGG: pmz:HMPREF0659_A5505 2.8e-124 UDP-N-acetylglucosamine 2-epimerase K01791; Psort location: Cytoplasmic, score: 9.97.
       0.717
KXB79123.1
KEGG: rlt:Rleg2_4805 1.1e-38 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.506
KXB79709.1
KEGG: cbb:CLD_3123 0.00018 hypothetical protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 8.96.
   
    0.446
KXB74339.1
Peptidase, M48 family; KEGG: pmz:HMPREF0659_A5502 2.5e-100 peptidase, M48 family.
       0.405
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.