STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79168.1KEGG: bmq:BMQ_3109 1.2e-13 CAAX amino terminal protease family protein K07052; Psort location: CytoplasmicMembrane, score: 10.00. (276 aa)    
Predicted Functional Partners:
KXB79167.1
KEGG: pit:PIN17_A0378 0. calcium-translocating P-type ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.808
KXB79169.1
KEGG: pmz:HMPREF0659_A7207 5.4e-82 ribF; riboflavin biosynthesis protein RibF K11753; Psort location: Cytoplasmic, score: 9.97.
       0.753
KXB81585.1
YcaO-like family protein; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.731
KXB79170.1
Hypothetical protein.
       0.615
KXB79166.1
KEGG: pdn:HMPREF9137_1471 1.2e-157 putative 3-deoxy-7-phosphoheptulonate synthase; K04516 chorismate mutase; Psort location: Cytoplasmic, score: 9.97.
       0.581
KXB81582.1
ABC-2 type transporter; KEGG: apb:SAR116_0895 0.0070 ABC protein; Psort location: CytoplasmicMembrane, score: 10.00.
   
  
 0.493
KXB77508.1
ABC-2 type transporter; KEGG: phu:Phum_PHUM433630 1.8e-07 ABC transporter, putative; Psort location: CytoplasmicMembrane, score: 10.00.
   
  
 0.493
KXB77509.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
   
  
 0.493
KXB81584.1
SagB-type dehydrogenase domain protein; KEGG: bce:BC1248 7.5e-11 NADH oxidase; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.478
KXB79140.1
Nitroreductase family protein; KEGG: bfr:BF3826 5.7e-78 oxidoreductase; K00540; Belongs to the flavin oxidoreductase frp family.
  
  
 0.478
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.