STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79102.1Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 0.0016 TPR repeat-containing serine/threonine protein kinase K00908. (224 aa)    
Predicted Functional Partners:
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
    0.856
KXB79959.1
Hypothetical protein; KEGG: pdn:HMPREF9137_0079 1.2e-299 hypothetical protein; K03770 peptidyl-prolyl cis-trans isomerase D; Psort location: OuterMembrane, score: 9.49.
 
    0.776
KXB75734.1
OstA-like protein.
  
    0.719
KXB79956.1
Outer membrane insertion signal domain protein; Psort location: OuterMembrane, score: 9.52.
  
     0.705
recF
Putative DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
       0.697
KXB79100.1
Hypothetical protein.
       0.693
KXB78296.1
LysM domain protein; KEGG: ccm:Ccan_15880 1.3e-20 putative lysozyme.
 
  
  0.681
KXB79622.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
   
 0.673
KXB80387.1
Hypothetical protein.
  
     0.667
KXB77451.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.660
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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