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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78991.1Hydrolase, TatD family; KEGG: pmz:HMPREF0659_A7169 4.6e-92 hydrolase, TatD family; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97. (269 aa)    
Predicted Functional Partners:
KXB78992.1
Polyprenyl synthetase; KEGG: pdn:HMPREF9137_2101 1.5e-118 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97.
   
   0.860
KXB78993.1
TonB-dependent receptor.
       0.744
cmk
Cytidylate kinase; KEGG: pmz:HMPREF0659_A7170 4.4e-87 cmk; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
  
    0.605
secF
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
  
 0.550
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
 
    0.540
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 
   0.500
obg
Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
 
   
 0.408
KXB74994.1
KEGG: pdn:HMPREF9137_1209 0. glycosyltransferase group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.408
KXB79971.1
Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: pfe:PSF113_4167 1.9e-11 exbB; protein ExbB/TolQ K03561; Psort location: CytoplasmicMembrane, score: 10.00.
       0.405
KXB79972.1
Hypothetical protein; KEGG: bba:Bd0024 0.0063 sdhC; cytochrome B subunit K00241; Psort location: CytoplasmicMembrane, score: 10.00.
       0.405
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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