STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78992.1Polyprenyl synthetase; KEGG: pdn:HMPREF9137_2101 1.5e-118 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97. (324 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase; KEGG: pmz:HMPREF0659_A7170 4.4e-87 cmk; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
 
 
  0.887
KXB78963.1
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.874
KXB78991.1
Hydrolase, TatD family; KEGG: pmz:HMPREF0659_A7169 4.6e-92 hydrolase, TatD family; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97.
   
   0.860
KXB78993.1
TonB-dependent receptor.
       0.744
KXB81726.1
KEGG: pdn:HMPREF9137_0579 4.5e-117 polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.719
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
 
 0.701
KXB79014.1
Phosphoglucosamine mutase; KEGG: pmz:HMPREF0659_A5955 4.0e-205 glmM; phosphoglucosamine mutase K01840; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.553
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
     0.530
KXB75164.1
ABC transporter, ATP-binding protein; KEGG: bsa:Bacsa_3063 1.5e-86 Phosphonate-transporting ATPase K02065; Psort location: CytoplasmicMembrane, score: 7.88.
 
   
 0.495
KXB80136.1
KEGG: pmz:HMPREF0659_A5403 7.4e-149 putative aspartate transaminase; K00812 aspartate aminotransferase; Psort location: Cytoplasmic, score: 9.26.
 
  
 0.485
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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