STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78995.1Hypothetical protein; KEGG: cyh:Cyan8802_1013 5.7e-87 Agmatine deiminase; Psort location: Cytoplasmic, score: 9.97. (360 aa)    
Predicted Functional Partners:
KXB78996.1
Hydrolase, carbon-nitrogen family; KEGG: pit:PIN17_A1639 1.1e-127 putative N-carbamoylputrescine amidase; K12251 N-carbamoylputrescine amidase; Psort location: Cytoplasmic, score: 9.97.
 
 0.998
speA
Arginine 2-monooxygenase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.634
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.511
KXB81951.1
KEGG: pmz:HMPREF0659_A6683 5.9e-163 nspC; carboxynorspermidine decarboxylase; K13747 carboxynorspermidine decarboxylase; Psort location: Cytoplasmic, score: 8.96.
    
 0.459
KXB77787.1
KEGG: pmz:HMPREF0659_A5894 1.4e-124 pyridoxal-dependent decarboxylase, pyridoxal binding domain protein; K01586 diaminopimelate decarboxylase; Psort location: Cytoplasmic, score: 9.97.
    
 0.459
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.