STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78966.1Hypothetical protein; KEGG: apb:SAR116_2179 2.1e-10 permease K07090; Psort location: CytoplasmicMembrane, score: 10.00. (277 aa)    
Predicted Functional Partners:
KXB78965.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.966
KXB78436.1
Putative serine protease MucD; KEGG: pdn:HMPREF9137_1111 7.3e-213 peptidase Do; Psort location: Periplasmic, score: 10.00.
    
 
 0.687
KXB74994.1
KEGG: pdn:HMPREF9137_1209 0. glycosyltransferase group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.475
KXB78967.1
TrkA protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.416
KXB78968.1
Putative pyridoxal kinase; KEGG: pmz:HMPREF0659_A6314 7.6e-115 phosphomethylpyrimidine kinase K00868; Psort location: Cytoplasmic, score: 8.96.
       0.416
KXB78964.1
BNR/Asp-box repeat protein.
       0.414
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.