STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78967.1TrkA protein; Psort location: CytoplasmicMembrane, score: 10.00. (553 aa)    
Predicted Functional Partners:
KXB78968.1
Putative pyridoxal kinase; KEGG: pmz:HMPREF0659_A6314 7.6e-115 phosphomethylpyrimidine kinase K00868; Psort location: Cytoplasmic, score: 8.96.
       0.849
KXB78969.1
Putative membrane protein; KEGG: apb:SAR116_2069 1.9e-10 ABC transporter permease; Psort location: CytoplasmicMembrane, score: 10.00.
       0.456
KXB78965.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.416
KXB78966.1
Hypothetical protein; KEGG: apb:SAR116_2179 2.1e-10 permease K07090; Psort location: CytoplasmicMembrane, score: 10.00.
       0.416
KXB78739.1
Putative metal-binding protein.
  
     0.405
KXB74492.1
KEGG: pmz:HMPREF0659_A6312 2.8e-69 ferrichrome transport ATP-binding protein FhuC family protein; K02013 iron complex transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 7.88.
       0.405
KXB74491.1
Hypothetical protein.
       0.403
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.