Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB78746.1KEGG: pmz:HMPREF0659_A6104 6.1e-122 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259; Psort location: Periplasmic, score: 9.44. (445 aa)    
Predicted Functional Partners:
KXB81944.1
Transglycosylase; KEGG: pdn:HMPREF9137_0007 0. transglycosylase; K05366 penicillin-binding protein 1A; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.884
KXB78139.1
Putative penicillin-binding protein 2; KEGG: bsa:Bacsa_1389 4.0e-212 peptidoglycan glycosyltransferase K05515; Psort location: CytoplasmicMembrane, score: 7.88.
  
  
 0.872
KXB76001.1
Transglycosylase; KEGG: pdn:HMPREF9137_2310 0. transglycosylase; K05366 penicillin-binding protein 1A; Psort location: CytoplasmicMembrane, score: 9.82.
     
 0.862
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
     
 0.858
KXB77444.1
KEGG: pdn:HMPREF9137_0791 0. penicillin-binding protein, transpeptidase domain-containing protein; K03587 cell division protein FtsI (penicillin-binding protein 3); Psort location: CytoplasmicMembrane, score: 9.82.
     
 0.852
KXB78745.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.820
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.786
KXB78743.1
OmpA family protein; Psort location: OuterMembrane, score: 9.93.
 
     0.558
KXB78047.1
KEGG: rai:RA0C_1856 1.1e-17 pasta domain containing protein; K08884 serine/threonine protein kinase, bacterial; Psort location: Cytoplasmic, score: 8.96.
     
 0.473
KXB78035.1
Putative aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
    0.444
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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