Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB78778.1DNA (cytosine-5-)-methyltransferase; KEGG: bfs:BF1120 7.0e-176 modification enzyme of type III restriction-modification system; K00571 site-specific DNA-methyltransferase (adenine-specific); Psort location: Cytoplasmic, score: 8.96. (651 aa)    
Predicted Functional Partners:
KXB78780.1
Type III restriction enzyme, res subunit; KEGG: pah:Poras_0991 0. type III site-specific deoxyribonuclease; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.977
KXB78777.1
Type III restriction enzyme, res subunit; KEGG: mph:MLP_35860 2.0e-171 putative helicase.
 
   
 0.883
KXB78779.1
Toxin-antitoxin system, toxin component, Fic family; KEGG: pdn:HMPREF9137_0457 4.3e-25 purC_2; phosphoribosylaminoimidazole succinocarboxamide synthase; Psort location: Cytoplasmic, score: 8.96.
       0.775
KXB76012.1
Helicase protein; KEGG: atm:ANT_21200 3.0e-67 putative ATP-dependent helicase; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.656
KXB78781.1
Hypothetical protein.
       0.511
KXB78776.1
DNA-binding helix-turn-helix protein.
       0.445
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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