Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB78783.1Heavy metal efflux pump, CzcA family; KEGG: dat:HRM2_00450 1.4e-145 rndA; protein RndA K07787; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1440 aa)    
Predicted Functional Partners:
KXB78784.1
Efflux transporter, RND family, MFP subunit; KEGG: apb:SAR116_2008 6.1e-05 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.999
KXB74228.1
Efflux transporter, RND family, MFP subunit; KEGG: agr:AGROH133_15208 5.6e-15 transmembrane efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.986
KXB74227.1
RND transporter, HAE1 family; KEGG: rcp:RCAP_rcc02895 4.4e-158 mdtF; multidrug resistance protein MdtF K03296; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
0.945
KXB77510.1
Auxiliary transport protein, membrane fusion protein family protein; KEGG: pfe:PSF113_5667 1.3e-09 secretion protein family protein K01993.
 
 0.816
KXB81592.1
Hypothetical protein.
  
 0.784
KXB81560.1
Hypothetical protein.
  
 0.784
KXB76924.1
Hypothetical protein.
  
 0.784
KXB74434.1
Hypothetical protein.
  
 0.784
KXB77511.1
Psort location: OuterMembrane, score: 9.93.
 
 
 0.721
secF
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
      
 0.641
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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