Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB78784.1Efflux transporter, RND family, MFP subunit; KEGG: apb:SAR116_2008 6.1e-05 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (386 aa)    
Predicted Functional Partners:
KXB78783.1
Heavy metal efflux pump, CzcA family; KEGG: dat:HRM2_00450 1.4e-145 rndA; protein RndA K07787; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.999
KXB74227.1
RND transporter, HAE1 family; KEGG: rcp:RCAP_rcc02895 4.4e-158 mdtF; multidrug resistance protein MdtF K03296; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.924
KXB74226.1
Efflux transporter, outer membrane factor lipoprotein, NodT family; KEGG: pfe:PSF113_1856 1.3e-19 outer membrane pyoverdine eflux protein; Psort location: OuterMembrane, score: 9.92.
 
 0.788
KXB77511.1
Psort location: OuterMembrane, score: 9.93.
 
 0.784
KXB74010.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
 0.747
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.716
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
   
   0.658
KXB78782.1
Hypothetical protein.
       0.506
KXB77510.1
Auxiliary transport protein, membrane fusion protein family protein; KEGG: pfe:PSF113_5667 1.3e-09 secretion protein family protein K01993.
 
  
 0.423
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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