Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB78561.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (148 aa)    
Predicted Functional Partners:
KXB78563.1
Hypothetical protein.
 
     0.816
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.778
KXB78758.1
Hypothetical protein; KEGG: ccm:Ccan_18630 8.8e-11 riboflavin synthase subunit alpha; Psort location: Cytoplasmic, score: 8.96.
  
     0.750
KXB77476.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.750
KXB80419.1
uroporphyrinogen-III synthase; KEGG: pdn:HMPREF9137_0433 2.5e-107 hemD; uroporphyrinogen-III synthase K01719; Psort location: Cytoplasmic, score: 8.96.
  
     0.693
KXB80146.1
Hypothetical protein.
  
     0.687
KXB81930.1
Hypothetical protein.
  
     0.682
KXB78565.1
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
     0.682
KXB78564.1
Preprotein translocase, YajC subunit; KEGG: apb:SAR116_0407 3.3e-11 YajC K03210; Psort location: CytoplasmicMembrane, score: 9.82.
       0.681
KXB74218.1
Hypothetical protein.
  
     0.678
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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