STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimORibosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (432 aa)    
Predicted Functional Partners:
KXB78453.1
DNA-binding protein HU; KEGG: apb:SAR116_0173 1.3e-09 integration host factor subunit alpha K04764; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial histone-like protein family.
   
   0.851
KXB78454.1
DNA-binding protein HU; KEGG: phu:Phum_PHUM249060 0.00012 hypothetical protein; K14437 chromodomain-helicase-DNA-binding protein 7; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial histone-like protein family.
   
   0.851
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
  
    0.792
rlmN
23S rRNA methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.585
KXB78455.1
ATPase family protein; KEGG: pmz:HMPREF0659_A6831 8.4e-148 ATPase, AAA family; K03924 MoxR-like ATPase; Psort location: Cytoplasmic, score: 9.97.
       0.525
KXB78457.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.16.
       0.488
KXB78456.1
Hypothetical protein; KEGG: cnc:CNE_2c16150 2.5e-36 MoxR-like ATPase; Psort location: Cytoplasmic, score: 9.97.
       0.486
KXB78458.1
KEGG: fna:OOM_0180 4.5e-30 IMP dehydrogenase/GMP reductase:von Willebrand factor, type A K07114; Psort location: CytoplasmicMembrane, score: 10.00.
       0.475
KXB78459.1
KEGG: fna:OOM_0180 1.2e-21 IMP dehydrogenase/GMP reductase:von Willebrand factor, type A K07114; Psort location: CytoplasmicMembrane, score: 9.99.
       0.430
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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