STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78262.1MATE efflux family protein; KEGG: rcp:RCAP_rcc02680 1.2e-20 mdtK; multidrug resistance protein MdtK K03327; Psort location: CytoplasmicMembrane, score: 10.00. (466 aa)    
Predicted Functional Partners:
KXB78009.1
KEGG: pit:PIN17_A1294 9.4e-165 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134; Psort location: Cytoplasmic, score: 9.97.
   
  
 0.508
KXB79123.1
KEGG: rlt:Rleg2_4805 1.1e-38 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.507
KXB77642.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.501
KXB78261.1
KEGG: bvu:BVU_1166 1.1e-12 peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase.
       0.472
KXB77458.1
Hypothetical protein; KEGG: cco:CCC13826_2309 3.9e-47 hydrogenase-4 component C; Psort location: Cytoplasmic, score: 8.96.
 
     0.428
glyQS
glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.402
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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