Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB78241.1Hypothetical protein. (575 aa)    
Predicted Functional Partners:
KXB78242.1
KEGG: pdn:HMPREF9137_0969 0. peptidase, S8/S53 family; Psort location: Extracellular, score: 9.72; Belongs to the peptidase S8 family.
       0.762
KXB78243.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.96.
       0.740
KXB78240.1
SusD family protein.
       0.686
KXB78239.1
TonB-dependent receptor plug domain protein; KEGG: ccv:CCV52592_1977 0.0064 sulfate/thiosulfate import ATP-binding protein CysA; Psort location: OuterMembrane, score: 9.52.
       0.517
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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