Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB78242.1KEGG: pdn:HMPREF9137_0969 0. peptidase, S8/S53 family; Psort location: Extracellular, score: 9.72; Belongs to the peptidase S8 family. (951 aa)    
Predicted Functional Partners:
KXB78243.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.96.
 
 
   0.932
KXB78240.1
SusD family protein.
  
 0.883
KXB78241.1
Hypothetical protein.
       0.762
KXB78470.1
Hypothetical protein.
 
 
 0.759
KXB81738.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A5050 2.1e-103 hypothetical protein; K08884 serine/threonine protein kinase, bacterial; Psort location: Cytoplasmic, score: 8.96.
 
 
 
 0.726
KXB75103.1
Hypothetical protein; Psort location: Extracellular, score: 9.64.
   
 0.721
KXB75666.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
  
 0.719
KXB78999.1
Hypothetical protein.
   
 0.700
KXB79003.1
Hypothetical protein.
   
 0.700
KXB77719.1
Hypothetical protein.
   
 0.700
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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