STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78225.1Hypothetical protein. (573 aa)    
Predicted Functional Partners:
KXB75588.1
Hypothetical protein.
  
     0.714
KXB78993.1
TonB-dependent receptor.
  
     0.708
KXB79959.1
Hypothetical protein; KEGG: pdn:HMPREF9137_0079 1.2e-299 hypothetical protein; K03770 peptidyl-prolyl cis-trans isomerase D; Psort location: OuterMembrane, score: 9.49.
 
     0.674
KXB75734.1
OstA-like protein.
 
     0.653
KXB78959.1
Outer membrane protein.
 
     0.597
KXB80835.1
Pectinesterase inhibitor domain protein.
 
     0.575
KXB81404.1
Peptidase, M28 family; KEGG: pmz:HMPREF0659_A5088 2.8e-133 peptidase, M28 family.
 
     0.568
KXB80145.1
Outer membrane assembly lipoprotein YfiO.
  
     0.543
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
   
 0.540
KXB80397.1
Hypothetical protein; KEGG: fsi:Flexsi_0864 0.0028 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.532
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.