Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB78186.1DNA binding domain, excisionase family. (95 aa)    
Predicted Functional Partners:
KXB78185.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.96.
 
    
0.790
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
     
 0.681
KXB76345.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.495
KXB78144.1
DNA binding domain, excisionase family; KEGG: ptm:GSPATT00015437001 0.0014 hypothetical protein; K07953 GTP-binding protein SAR1.
  
     0.468
KXB76224.1
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.458
KXB74123.1
Peptidase, M23 family; KEGG: zga:zobellia_3141 1.1e-53 metallopeptidase.
  
     0.441
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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