Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB77992.1Bacterial transferase hexapeptide repeat protein; KEGG: ccm:Ccan_18450 3.7e-35 protein yrdA; Psort location: Cytoplasmic, score: 9.26. (167 aa)    
Predicted Functional Partners:
KXB77993.1
Hypothetical protein.
       0.506
KXB79122.1
KEGG: pmz:HMPREF0659_A5505 2.8e-124 UDP-N-acetylglucosamine 2-epimerase K01791; Psort location: Cytoplasmic, score: 9.97.
    
  0.467
KXB79153.1
Dihydroorotase; KEGG: pmz:HMPREF0659_A5999 3.6e-156 amidohydrolase family protein; K01465 dihydroorotase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.444
KXB80119.1
Thioredoxin; KEGG: cla:Cla_1412 1.0e-25 trx; thioredoxin K03671; Psort location: Cytoplasmic, score: 9.26; Belongs to the thioredoxin family.
    
 
 0.438
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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