STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78061.1KEGG: fin:KQS_02220 3.7e-35 nucA; DNA/RNA non-specific endonuclease precursor K01173; Psort location: Extracellular, score: 9.71. (291 aa)    
Predicted Functional Partners:
KXB78060.1
Hypothetical protein; KEGG: bth:BT_3982 6.6e-132 exonuclease V subunit alpha; K01144 exodeoxyribonuclease V.
       0.836
KXB78062.1
TIGR00659 family protein; KEGG: bqy:MUS_4224 3.2e-29 ywbG; murein hydrolase export regulator; Psort location: CytoplasmicMembrane, score: 10.00.
       0.737
rnz
Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
   
   0.694
KXB78063.1
LrgA family protein; KEGG: bcz:BCZK3375 4.7e-12 holin-like protein K06518; Psort location: CytoplasmicMembrane, score: 10.00.
       0.512
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.504
KXB75593.1
Putative ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
  
     0.466
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.