STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78064.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (369 aa)    
Predicted Functional Partners:
KXB78065.1
KEGG: pdi:BDI_3001 1.3e-151 site-specific DNA methylase; K00558 DNA (cytosine-5-)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
     
 0.790
KXB78066.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.497
KXB78067.1
RNA methyltransferase, RsmD family; KEGG: sgn:SGRA_2919 1.3e-34 rsmD; methyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.461
KXB78063.1
LrgA family protein; KEGG: bcz:BCZK3375 4.7e-12 holin-like protein K06518; Psort location: CytoplasmicMembrane, score: 10.00.
       0.429
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.