Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB78105.1DNA-binding helix-turn-helix protein; KEGG: gob:Gobs_3103 0.00031 XRE family transcriptional regulator; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Psort location: Cytoplasmic, score: 8.96. (108 aa)    
Predicted Functional Partners:
KXB78104.1
Toxin-antitoxin system, toxin component, RelE family; Psort location: Cytoplasmic, score: 8.96.
 
     0.950
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
    
 0.829
KXB79511.1
DNA-binding helix-turn-helix protein; KEGG: cja:CJA_3717 9.6e-05 dam; adenine-specific DNA methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
     0.773
KXB79510.1
Toxin-antitoxin system, toxin component, RelE family; KEGG: cla:Cla_0786 0.0077 msrA; methionine sulfoxide reductase A K07304.
 
     0.758
KXB78102.1
Hypothetical protein.
       0.645
KXB78103.1
PAP2 family protein; KEGG: cbj:H04402_00358 0.00032 phosphatidylglycerophosphatase B.
       0.645
KXB76224.1
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.537
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.521
KXB78101.1
Hypothetical protein.
       0.482
KXB74137.1
Malic enzyme, NAD binding domain protein; KEGG: pmz:HMPREF0659_A6863 1.2e-187 malate dehydrogenase (oxaloacetate-decarboxylating) K00029; Psort location: Cytoplasmic, score: 9.97.
     
  0.476
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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