STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB78111.1TrkA protein; Psort location: CytoplasmicMembrane, score: 10.00. (564 aa)    
Predicted Functional Partners:
KXB78109.1
Hypothetical protein; KEGG: ssr:SALIVB_2089 1.9e-24 tyrosyl-tRNA synthetase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.553
KXB78110.1
KEGG: pit:PIN17_A1075 1.5e-159 trmU; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 9.97.
       0.553
KXB78112.1
Hypothetical protein.
       0.414
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.