KXB78147.1 protein (Prevotella amnii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KXB78147.1

Hypothetical protein. (116 aa)

Predicted Functional Partners:

KXB78148.1

0.934

KXB78145.1

0.873

KXB78150.1

0.862

KXB78144.1

0.843

KXB78146.1

0.820

KXB77262.1

0.779

KXB77277.1

0.773

KXB77269.1

0.770

KXB77289.1

0.769

KXB77293.1

0.769

Your Current Organism:

Prevotella amnii

NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB77262.1	KXB77269.1	HMPREF1860_01432	HMPREF1860_01439	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	RteC protein; Psort location: Cytoplasmic, score: 8.96.	0.762
KXB77262.1	KXB77277.1	HMPREF1860_01432	HMPREF1860_01447	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.746
KXB77262.1	KXB77289.1	HMPREF1860_01432	HMPREF1860_01459	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon TraM protein.	0.767
KXB77262.1	KXB77293.1	HMPREF1860_01432	HMPREF1860_01463	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon protein TraQ family protein.	0.767
KXB77262.1	KXB78144.1	HMPREF1860_01432	HMPREF1860_01187	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	DNA binding domain, excisionase family; KEGG: ptm:GSPATT00015437001 0.0014 hypothetical protein; K07953 GTP-binding protein SAR1.	0.743
KXB77262.1	KXB78145.1	HMPREF1860_01432	HMPREF1860_01188	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.735
KXB77262.1	KXB78147.1	HMPREF1860_01432	HMPREF1860_01190	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.779
KXB77262.1	KXB78148.1	HMPREF1860_01432	HMPREF1860_01191	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: dre:321277 1.0e-07 mybbp1a, cb486, sb:cb486; MYB binding protein (P160) 1a; K02331 DNA polymerase phi subunit; Psort location: Cytoplasmic, score: 8.96.	0.774
KXB77262.1	KXB78150.1	HMPREF1860_01432	HMPREF1860_01193	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.796
KXB77269.1	KXB77262.1	HMPREF1860_01439	HMPREF1860_01432	RteC protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	0.762
KXB77269.1	KXB77277.1	HMPREF1860_01439	HMPREF1860_01447	RteC protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.764
KXB77269.1	KXB77289.1	HMPREF1860_01439	HMPREF1860_01459	RteC protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon TraM protein.	0.768
KXB77269.1	KXB77293.1	HMPREF1860_01439	HMPREF1860_01463	RteC protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon protein TraQ family protein.	0.751
KXB77269.1	KXB78144.1	HMPREF1860_01439	HMPREF1860_01187	RteC protein; Psort location: Cytoplasmic, score: 8.96.	DNA binding domain, excisionase family; KEGG: ptm:GSPATT00015437001 0.0014 hypothetical protein; K07953 GTP-binding protein SAR1.	0.698
KXB77269.1	KXB78145.1	HMPREF1860_01439	HMPREF1860_01188	RteC protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.719
KXB77269.1	KXB78147.1	HMPREF1860_01439	HMPREF1860_01190	RteC protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.770
KXB77269.1	KXB78148.1	HMPREF1860_01439	HMPREF1860_01191	RteC protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: dre:321277 1.0e-07 mybbp1a, cb486, sb:cb486; MYB binding protein (P160) 1a; K02331 DNA polymerase phi subunit; Psort location: Cytoplasmic, score: 8.96.	0.774
KXB77269.1	KXB78150.1	HMPREF1860_01439	HMPREF1860_01193	RteC protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.769
KXB77277.1	KXB77262.1	HMPREF1860_01447	HMPREF1860_01432	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: pmn:PMN2A_1332 0.00016 DNA topoisomerase IV subunit A K02469; Psort location: Cytoplasmic, score: 8.96.	0.746
KXB77277.1	KXB77269.1	HMPREF1860_01447	HMPREF1860_01439	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	RteC protein; Psort location: Cytoplasmic, score: 8.96.	0.764