STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB77806.1DNA polymerase III, delta subunit; KEGG: pdn:HMPREF9137_1543 1.3e-128 holA; DNA polymerase III subunit delta K02340. (342 aa)    
Predicted Functional Partners:
KXB74394.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 
 0.980
KXB80120.1
KEGG: pmz:HMPREF0659_A5447 0. putative DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.
  
 0.967
dnaX
DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
 
 0.964
KXB74266.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A5422 1.4e-136 hypothetical protein; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.953
KXB74393.1
Exonuclease; KEGG: pmz:HMPREF0659_A5674 6.7e-123 exonuclease; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.903
KXB79112.1
UvrD/REP helicase; KEGG: pmz:HMPREF0659_A6530 7.4e-291 UvrD/REP helicase K03657; Psort location: Cytoplasmic, score: 9.97.
   
 0.870
KXB74244.1
Type I restriction enzyme HsdR protein; KEGG: nth:Nther_0809 3.8e-05 LexA repressor; Psort location: Cytoplasmic, score: 8.96.
 
     0.682
KXB80146.1
Hypothetical protein.
 
     0.594
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.580
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.564
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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