Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB77712.1Hypothetical protein; KEGG: edi:EDI_024060 3.6e-28 trichohyalin K13173; Psort location: Cytoplasmic, score: 9.26. (281 aa)    
Predicted Functional Partners:
KXB77711.1
Hypothetical protein; KEGG: aai:AARI_02060 5.2e-06 peptidase M23.
      
0.773
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
  
 
 0.653
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.650
KXB77713.1
Hypothetical protein; KEGG: edi:EDI_255270 5.3e-14 neurofilament medium polypeptide; Psort location: Cytoplasmic, score: 9.26.
      
0.605
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 
 0.576
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.575
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.575
rplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 7.5e-21 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.573
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
 
 0.571
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
  0.550
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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