Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB77569.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (464 aa)    
Predicted Functional Partners:
KXB77570.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.760
KXB77568.1
Phage terminase, large subunit, PBSX family; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.752
KXB75113.1
Putative phage DNA packaging protein.
   
  0.740
KXB74565.1
Tape measure domain protein; KEGG: edi:EDI_341030 2.5e-21 intracellular protein transport protein USO1; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.669
KXB75114.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
   0.650
KXB77567.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.588
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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