Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB77458.1Hypothetical protein; KEGG: cco:CCC13826_2309 3.9e-47 hydrogenase-4 component C; Psort location: Cytoplasmic, score: 8.96. (280 aa)    
Predicted Functional Partners:
KXB77459.1
Putative hemolysin; KEGG: pit:PIN17_A0842 9.7e-147 putative cystathionine beta-lyase PatB; K14155 cystathione beta-lyase; Psort location: Cytoplasmic, score: 9.97.
     0.975
KXB79757.1
Hypothetical protein; KEGG: cla:Cla_0033 0.0025 MoxR/RavA-like ATPase; K03924 MoxR-like ATPase; Psort location: Cytoplasmic, score: 8.96.
  
     0.556
KXB77457.1
Arylsulfatase; KEGG: pdn:HMPREF9137_0912 4.7e-225 arylsulfatase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.465
KXB78262.1
MATE efflux family protein; KEGG: rcp:RCAP_rcc02680 1.2e-20 mdtK; multidrug resistance protein MdtK K03327; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.427
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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