STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB77369.1Transposase, IS4 family; KEGG: efc:EFAU004_01844 2.6e-16 transposase, IS4 family. (202 aa)    
Predicted Functional Partners:
KXB75003.1
Hypothetical protein; KEGG: api:100166144 9.7e-33 DNA2-like helicase-like; K10742 DNA replication ATP-dependent helicase Dna2; Psort location: Cytoplasmic, score: 8.96.
  
    0.666
KXB74159.1
Phosphate-selective porin O and P.
  
     0.659
KXB78275.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.581
KXB77370.1
Hypothetical protein.
       0.569
KXB79107.1
Hypothetical protein.
  
     0.527
KXB78243.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.96.
  
     0.492
KXB77618.1
Fic family protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.425
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.