| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KXB77264.1 | KXB77265.1 | HMPREF1860_01434 | HMPREF1860_01435 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: zga:zobellia_1342 6.0e-50 two-component system hybrid-sensor histidine kinase/response regulator, receiver domain; Psort location: CytoplasmicMembrane, score: 10.00. | 0.946 |
| KXB77264.1 | rplC | HMPREF1860_01434 | HMPREF1860_00188 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.908 |
| KXB77264.1 | rplM | HMPREF1860_01434 | HMPREF1860_00510 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.903 |
| KXB77264.1 | rplP | HMPREF1860_01434 | HMPREF1860_00195 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.908 |
| KXB77264.1 | rplR | HMPREF1860_01434 | HMPREF1860_00204 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.904 |
| KXB77264.1 | rpsE | HMPREF1860_01434 | HMPREF1860_00205 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.903 |
| KXB77264.1 | rpsG | HMPREF1860_01434 | HMPREF1860_00185 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.896 |
| KXB77264.1 | rpsJ | HMPREF1860_01434 | HMPREF1860_00187 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.896 |
| KXB77264.1 | rpsK | HMPREF1860_01434 | HMPREF1860_00212 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.905 |
| KXB77264.1 | rpsL | HMPREF1860_01434 | HMPREF1860_00184 | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.896 |
| KXB77265.1 | KXB77264.1 | HMPREF1860_01435 | HMPREF1860_01434 | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: zga:zobellia_1342 6.0e-50 two-component system hybrid-sensor histidine kinase/response regulator, receiver domain; Psort location: CytoplasmicMembrane, score: 10.00. | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | 0.946 |
| rplC | KXB77264.1 | HMPREF1860_00188 | HMPREF1860_01434 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Putative translation elongation factor G; KEGG: bnm:BALAC2494_01437 4.4e-64 Protein-synthesizing GTPase; Psort location: Cytoplasmic, score: 9.97. | 0.908 |
| rplC | rplM | HMPREF1860_00188 | HMPREF1860_00510 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplP | HMPREF1860_00188 | HMPREF1860_00195 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
| rplC | rplR | HMPREF1860_00188 | HMPREF1860_00204 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplC | rpsE | HMPREF1860_00188 | HMPREF1860_00205 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.994 |
| rplC | rpsG | HMPREF1860_00188 | HMPREF1860_00185 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.994 |
| rplC | rpsJ | HMPREF1860_00188 | HMPREF1860_00187 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.997 |
| rplC | rpsK | HMPREF1860_00188 | HMPREF1860_00212 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.992 |
| rplC | rpsL | HMPREF1860_00188 | HMPREF1860_00184 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.993 |
STRING v12.5 is now available!
