KXB77279.1 protein (Prevotella amnii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KXB77279.1

Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00. (105 aa)

Predicted Functional Partners:

KXB77280.1

0.944

KXB76562.1

0.785

KXB74848.1

0.785

KXB77286.1

0.780

KXB77287.1

0.780

KXB76639.1

0.780

KXB74852.1

0.779

KXB76642.1

0.777

KXB74851.1

0.774

KXB77290.1

0.771

Your Current Organism:

Prevotella amnii

NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB74848.1	KXB74851.1	HMPREF1860_01956	HMPREF1860_01959	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.888
KXB74848.1	KXB74852.1	HMPREF1860_01956	HMPREF1860_01960	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraK protein.	0.867
KXB74848.1	KXB76639.1	HMPREF1860_01956	HMPREF1860_01568	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraK protein.	0.772
KXB74848.1	KXB76642.1	HMPREF1860_01956	HMPREF1860_01571	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Hypothetical protein.	0.721
KXB74848.1	KXB77279.1	HMPREF1860_01956	HMPREF1860_01449	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	0.785
KXB74848.1	KXB77286.1	HMPREF1860_01956	HMPREF1860_01456	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.744
KXB74848.1	KXB77287.1	HMPREF1860_01956	HMPREF1860_01457	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraK protein.	0.768
KXB74848.1	KXB77290.1	HMPREF1860_01956	HMPREF1860_01460	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraN protein; Psort location: Cytoplasmic, score: 8.96.	0.768
KXB74851.1	KXB74848.1	HMPREF1860_01959	HMPREF1860_01956	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.888
KXB74851.1	KXB74852.1	HMPREF1860_01959	HMPREF1860_01960	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraK protein.	0.918
KXB74851.1	KXB76562.1	HMPREF1860_01959	HMPREF1860_01573	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.754
KXB74851.1	KXB76639.1	HMPREF1860_01959	HMPREF1860_01568	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraK protein.	0.792
KXB74851.1	KXB76642.1	HMPREF1860_01959	HMPREF1860_01571	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.785
KXB74851.1	KXB77279.1	HMPREF1860_01959	HMPREF1860_01449	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	0.774
KXB74851.1	KXB77280.1	HMPREF1860_01959	HMPREF1860_01450	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.720
KXB74851.1	KXB77287.1	HMPREF1860_01959	HMPREF1860_01457	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraK protein.	0.790
KXB74851.1	KXB77290.1	HMPREF1860_01959	HMPREF1860_01460	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraN protein; Psort location: Cytoplasmic, score: 8.96.	0.688
KXB74852.1	KXB74848.1	HMPREF1860_01960	HMPREF1860_01956	Conjugative transposon TraK protein.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.867
KXB74852.1	KXB74851.1	HMPREF1860_01960	HMPREF1860_01959	Conjugative transposon TraK protein.	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.918
KXB74852.1	KXB76562.1	HMPREF1860_01960	HMPREF1860_01573	Conjugative transposon TraK protein.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.770