Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB77279.1Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00. (105 aa)    
Predicted Functional Partners:
KXB77280.1
Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.943
KXB74848.1
Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.782
KXB77287.1
Conjugative transposon TraK protein.
 
     0.776
KXB76639.1
Conjugative transposon TraK protein.
 
     0.776
KXB76562.1
Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.776
KXB74852.1
Conjugative transposon TraK protein.
 
     0.775
KXB77286.1
Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.771
KXB76642.1
Hypothetical protein.
 
     0.771
KXB77290.1
Conjugative transposon TraN protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.769
KXB76636.1
Conjugative transposon TraN protein.
 
     0.768
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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