KXB77290.1 protein (Prevotella amnii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KXB77290.1

Conjugative transposon TraN protein; Psort location: Cytoplasmic, score: 8.96. (322 aa)

Predicted Functional Partners:

KXB77289.1

0.909

KXB77287.1

0.892

KXB77285.1

0.875

KXB77286.1

0.867

KXB77293.1

0.784

KXB77283.1

0.782

KXB77280.1

0.776

KXB76562.1

0.771

KXB77279.1

0.769

KXB74848.1

0.769

Your Current Organism:

Prevotella amnii

NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB74848.1	KXB77279.1	HMPREF1860_01956	HMPREF1860_01449	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	0.782
KXB74848.1	KXB77283.1	HMPREF1860_01956	HMPREF1860_01453	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.615
KXB74848.1	KXB77285.1	HMPREF1860_01956	HMPREF1860_01455	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon protein TraI; KEGG: dte:Dester_1111 0.0054 nicotinate-nucleotide pyrophosphorylase K00767.	0.740
KXB74848.1	KXB77286.1	HMPREF1860_01956	HMPREF1860_01456	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.740
KXB74848.1	KXB77287.1	HMPREF1860_01956	HMPREF1860_01457	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraK protein.	0.769
KXB74848.1	KXB77289.1	HMPREF1860_01956	HMPREF1860_01459	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraM protein.	0.609
KXB74848.1	KXB77290.1	HMPREF1860_01956	HMPREF1860_01460	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraN protein; Psort location: Cytoplasmic, score: 8.96.	0.769
KXB76562.1	KXB77279.1	HMPREF1860_01573	HMPREF1860_01449	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	0.776
KXB76562.1	KXB77283.1	HMPREF1860_01573	HMPREF1860_01453	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.630
KXB76562.1	KXB77285.1	HMPREF1860_01573	HMPREF1860_01455	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon protein TraI; KEGG: dte:Dester_1111 0.0054 nicotinate-nucleotide pyrophosphorylase K00767.	0.741
KXB76562.1	KXB77286.1	HMPREF1860_01573	HMPREF1860_01456	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.738
KXB76562.1	KXB77287.1	HMPREF1860_01573	HMPREF1860_01457	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraK protein.	0.770
KXB76562.1	KXB77289.1	HMPREF1860_01573	HMPREF1860_01459	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraM protein.	0.624
KXB76562.1	KXB77290.1	HMPREF1860_01573	HMPREF1860_01460	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraN protein; Psort location: Cytoplasmic, score: 8.96.	0.771
KXB77279.1	KXB74848.1	HMPREF1860_01449	HMPREF1860_01956	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.782
KXB77279.1	KXB76562.1	HMPREF1860_01449	HMPREF1860_01573	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.776
KXB77279.1	KXB77280.1	HMPREF1860_01449	HMPREF1860_01450	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.943
KXB77279.1	KXB77283.1	HMPREF1860_01449	HMPREF1860_01453	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.758
KXB77279.1	KXB77285.1	HMPREF1860_01449	HMPREF1860_01455	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraI; KEGG: dte:Dester_1111 0.0054 nicotinate-nucleotide pyrophosphorylase K00767.	0.731
KXB77279.1	KXB77286.1	HMPREF1860_01449	HMPREF1860_01456	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.771