Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB77291.1CHC2 zinc finger domain protein; KEGG: liv:LIV_1412 4.8e-09 dnaG; putative DNA primase; K02316 DNA primase; Psort location: Cytoplasmic, score: 8.96. (300 aa)    
Predicted Functional Partners:
KXB77294.1
Hypothetical protein; KEGG: pgn:PGN_0055 3.8e-42 lysozyme; K01185 lysozyme.
 
     0.912
KXB77293.1
Conjugative transposon protein TraQ family protein.
 
     0.834
KXB79702.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
  0.779
KXB77269.1
RteC protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.696
KXB78148.1
Hypothetical protein; KEGG: dre:321277 1.0e-07 mybbp1a, cb486, sb:cb486; MYB binding protein (P160) 1a; K02331 DNA polymerase phi subunit; Psort location: Cytoplasmic, score: 8.96.
  
    0.623
KXB77265.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: zga:zobellia_1342 6.0e-50 two-component system hybrid-sensor histidine kinase/response regulator, receiver domain; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.617
KXB77116.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 8.6e-09 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
 
    0.596
KXB77292.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.572
KXB78142.1
Site-specific recombinase, phage integrase family; KEGG: bsr:I33_1800 0.00014 xerC; ATP-dependent protease HslV K03733; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
  
     0.540
KXB75600.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 2.3e-09 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
 
    0.533
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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