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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB77291.1CHC2 zinc finger domain protein; KEGG: liv:LIV_1412 4.8e-09 dnaG; putative DNA primase; K02316 DNA primase; Psort location: Cytoplasmic, score: 8.96. (300 aa)    
Predicted Functional Partners:
KXB77294.1
Hypothetical protein; KEGG: pgn:PGN_0055 3.8e-42 lysozyme; K01185 lysozyme.
 
     0.913
KXB77293.1
Conjugative transposon protein TraQ family protein.
 
     0.836
KXB79702.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.779
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
  
   0.710
KXB77269.1
RteC protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.696
KXB79469.1
Hypothetical protein.
  
  0.656
KXB79119.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
  0.656
KXB74946.1
Hypothetical protein.
  
  0.656
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.623
KXB78148.1
Hypothetical protein; KEGG: dre:321277 1.0e-07 mybbp1a, cb486, sb:cb486; MYB binding protein (P160) 1a; K02331 DNA polymerase phi subunit; Psort location: Cytoplasmic, score: 8.96.
  
    0.622
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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