Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB77314.1Hypothetical protein; KEGG: snc:HMPREF0837_11767 2.7e-08 murE2; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase. (229 aa)    
Predicted Functional Partners:
KXB77643.1
TonB-dependent receptor; KEGG: mct:MCR_0690 8.2e-07 tbpA; transferrin binding protein A TbpA K16087; Psort location: OuterMembrane, score: 10.00.
 
     0.546
KXB77049.1
Hypothetical protein; KEGG: mct:MCR_0333 5.9e-05 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 8.96; Belongs to the Fur family.
  
     0.439
KXB77313.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.49.
       0.408
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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