Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
KXB77051.1Pseudouridylate synthase; KEGG: pmz:HMPREF0659_A6154 2.7e-183 pseudouridylate synthase; K06178 23S rRNA pseudouridine2605 synthase; Psort location: Cytoplasmic, score: 9.94; Belongs to the pseudouridine synthase RsuA family. (528 aa)    
Predicted Functional Partners:
KXB74195.1
Exodeoxyribonuclease III; KEGG: pmz:HMPREF0659_A5467 8.2e-118 xth; exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.97.
  
    0.826
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.825
cmk
Cytidylate kinase; KEGG: pmz:HMPREF0659_A7170 4.4e-87 cmk; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.783
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
   0.708
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
   0.650
asnS
asparagine--tRNA ligase; KEGG: pmz:HMPREF0659_A6155 2.5e-228 asnS; asparagine--tRNA ligase K01893; Psort location: Cytoplasmic, score: 10.00.
       0.647
KXB77050.1
Adenylosuccinate lyase; KEGG: pdn:HMPREF9137_0243 1.2e-203 purB; adenylosuccinate lyase K01756; Psort location: Cytoplasmic, score: 9.97.
     
 0.642
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
   
 
 0.617
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.597
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.589
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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