Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB76634.1Conjugative transposon protein TraQ. (161 aa)    
Predicted Functional Partners:
KXB76635.1
Conjugative transposon protein TraO.
 
     0.944
KXB76636.1
Conjugative transposon TraN protein.
 
     0.942
KXB76637.1
Conjugative transposon TraM protein.
 
     0.908
KXB76633.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A7234 3.5e-62 phage lysozyme.
 
     0.829
KXB76641.1
Conjugative transposon protein TraI.
 
     0.815
KXB76566.1
Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.795
KXB76568.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.792
KXB74856.1
Conjugative transposon protein TraO.
 
     0.782
KXB74855.1
Conjugative transposon TraN protein.
 
     0.773
KXB74850.1
Conjugative transposon protein TraI.
 
     0.772
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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