Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB76636.1Conjugative transposon TraN protein. (316 aa)    
Predicted Functional Partners:
KXB76634.1
Conjugative transposon protein TraQ.
 
     0.942
KXB76635.1
Conjugative transposon protein TraO.
 
     0.940
KXB76637.1
Conjugative transposon TraM protein.
 
     0.914
KXB76639.1
Conjugative transposon TraK protein.
 
   
 0.860
KXB76641.1
Conjugative transposon protein TraI.
 
     0.827
KXB76640.1
Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.823
KXB76562.1
Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.812
KXB76563.1
Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.808
KXB76642.1
Hypothetical protein.
 
   
 0.804
KXB76561.1
Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.
 
   
 0.793
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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