Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB76637.1Conjugative transposon TraM protein. (421 aa)    
Predicted Functional Partners:
KXB76635.1
Conjugative transposon protein TraO.
 
     0.915
KXB76636.1
Conjugative transposon TraN protein.
 
     0.914
KXB76634.1
Conjugative transposon protein TraQ.
 
     0.908
KXB76639.1
Conjugative transposon TraK protein.
 
     0.846
KXB76641.1
Conjugative transposon protein TraI.
 
     0.834
KXB76640.1
Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.815
KXB76566.1
Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.805
KXB76562.1
Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.798
KXB76569.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 6.5e-11 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
 
     0.797
KXB76568.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.793
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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