STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB76640.1Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00. (345 aa)    
Predicted Functional Partners:
KXB76641.1
Conjugative transposon protein TraI.
 
     0.930
KXB76642.1
Hypothetical protein.
 
   
 0.921
KXB76561.1
Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.
 
   
 0.874
KXB76639.1
Conjugative transposon TraK protein.
 
   
 0.868
KXB76563.1
Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.867
KXB76562.1
Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.861
KXB76636.1
Conjugative transposon TraN protein.
 
     0.822
KXB76637.1
Conjugative transposon TraM protein.
     0.814
KXB76566.1
Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.805
KXB76569.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 6.5e-11 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
 
     0.804
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.