Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB76566.1Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96. (257 aa)    
Predicted Functional Partners:
KXB76641.1
Conjugative transposon protein TraI.
 
     0.840
KXB76568.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.833
KXB76569.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 6.5e-11 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
 
     0.828
KXB76570.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
 
   
 0.807
KXB76635.1
Conjugative transposon protein TraO.
 
     0.806
KXB76640.1
Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.806
KXB76637.1
Conjugative transposon TraM protein.
 
     0.805
KXB76634.1
Conjugative transposon protein TraQ.
 
     0.795
KXB76636.1
Conjugative transposon TraN protein.
 
     0.791
KXB74856.1
Conjugative transposon protein TraO.
 
     0.777
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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