KXB76516.1 protein (Prevotella amnii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KXB76516.1

Hypothetical protein. (137 aa)

Predicted Functional Partners:

KXB76499.1

0.974

KXB76541.1

0.915

KXB76635.1

0.774

KXB74856.1

0.774

KXB78164.1

0.773

KXB76566.1

0.773

KXB76568.1

0.773

KXB74840.1

0.773

KXB74842.1

0.773

KXB76637.1

0.772

Your Current Organism:

Prevotella amnii

NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB74840.1	KXB74842.1	HMPREF1860_01948	HMPREF1860_01950	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	0.840
KXB74840.1	KXB74856.1	HMPREF1860_01948	HMPREF1860_01964	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon protein TraO.	0.774
KXB74840.1	KXB76499.1	HMPREF1860_01948	HMPREF1860_01597	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: blf:BLIF_1156 0.0053 DNA topoisomerase; K03169 DNA topoisomerase III; Psort location: Cytoplasmic, score: 8.96.	0.774
KXB74840.1	KXB76516.1	HMPREF1860_01948	HMPREF1860_01596	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.773
KXB74840.1	KXB76541.1	HMPREF1860_01948	HMPREF1860_01595	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.772
KXB74840.1	KXB76566.1	HMPREF1860_01948	HMPREF1860_01577	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	0.773
KXB74840.1	KXB76635.1	HMPREF1860_01948	HMPREF1860_01564	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon protein TraO.	0.773
KXB74840.1	KXB76637.1	HMPREF1860_01948	HMPREF1860_01566	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon TraM protein.	0.768
KXB74840.1	KXB78164.1	HMPREF1860_01948	HMPREF1860_01207	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.737
KXB74842.1	KXB74840.1	HMPREF1860_01950	HMPREF1860_01948	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.840
KXB74842.1	KXB74856.1	HMPREF1860_01950	HMPREF1860_01964	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon protein TraO.	0.789
KXB74842.1	KXB76499.1	HMPREF1860_01950	HMPREF1860_01597	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: blf:BLIF_1156 0.0053 DNA topoisomerase; K03169 DNA topoisomerase III; Psort location: Cytoplasmic, score: 8.96.	0.773
KXB74842.1	KXB76516.1	HMPREF1860_01950	HMPREF1860_01596	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.773
KXB74842.1	KXB76541.1	HMPREF1860_01950	HMPREF1860_01595	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.770
KXB74842.1	KXB76568.1	HMPREF1860_01950	HMPREF1860_01579	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.774
KXB74842.1	KXB76635.1	HMPREF1860_01950	HMPREF1860_01564	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon protein TraO.	0.789
KXB74842.1	KXB76637.1	HMPREF1860_01950	HMPREF1860_01566	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Conjugative transposon TraM protein.	0.774
KXB74842.1	KXB78164.1	HMPREF1860_01950	HMPREF1860_01207	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.727
KXB74856.1	KXB74840.1	HMPREF1860_01964	HMPREF1860_01948	Conjugative transposon protein TraO.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.774
KXB74856.1	KXB74842.1	HMPREF1860_01964	HMPREF1860_01950	Conjugative transposon protein TraO.	Conjugative transposon protein TraA family protein; Psort location: Cytoplasmic, score: 8.96.	0.789