Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB76243.1Hypothetical protein; KEGG: bya:BANAU_3017 5.1e-05 mcpA; methyl-accepting chemotaxis protein McpA K03406; Psort location: Extracellular, score: 9.64. (329 aa)    
Predicted Functional Partners:
KXB76240.1
Hypothetical protein; KEGG: epy:EpC_05910 7.4e-06 Non-specific serine/threonine protein kinase; Psort location: Cytoplasmic, score: 8.96.
   
   0.838
KXB76242.1
OmpA family protein; KEGG: pfe:PSF113_0716 0.0018 yfiB; protein YfiB.
     
 0.788
KXB76241.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.785
KXB75595.1
KEGG: bsa:Bacsa_0821 2.9e-33 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Psort location: Extracellular, score: 9.78.
    
 
 0.623
KXB79136.1
KEGG: pmz:HMPREF0659_A5961 1.6e-242 ATP-dependent DNA helicase, RecQ family K03654; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.603
KXB75158.1
KEGG: pmz:HMPREF0659_A6179 0. recQ; ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.603
KXB78972.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: pmz:HMPREF0659_A5055 0. DNA topoisomerase IV subunit B; K02622 topoisomerase IV subunit B; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.602
KXB78158.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.602
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.602
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 
 0.574
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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