Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB76218.1TonB-dependent receptor; KEGG: pfh:PFHG_03728 0.0023 hypothetical protein similar to carbamoyl-phosphate synthase; K01954 carbamoyl-phosphate synthase; Psort location: OuterMembrane, score: 9.49. (598 aa)    
Predicted Functional Partners:
KXB75586.1
TonB-dependent receptor plug domain protein; KEGG: ccv:CCV52592_1977 0.00055 sulfate/thiosulfate import ATP-binding protein CysA; Psort location: OuterMembrane, score: 9.49.
  
     0.693
KXB75585.1
SusD family protein.
  
     0.649
KXB75623.1
TonB-dependent receptor plug domain protein; KEGG: ccv:CCV52592_1977 0.00067 sulfate/thiosulfate import ATP-binding protein CysA.
  
  
  0.615
KXB75667.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 9.49.
  
     0.581
KXB76219.1
Hypothetical protein.
       0.532
KXB80132.1
TonB-dependent receptor; KEGG: hip:CGSHiEE_01810 2.4e-07 bcp; TonB K03832; Psort location: Periplasmic, score: 9.83.
  
   0.524
KXB78132.1
Hypothetical protein.
  
 
   0.497
KXB74221.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 10.00.
  
     0.484
KXB75666.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.483
KXB80395.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.49.
  
  
 
0.472
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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